Ground State and Transition State Contributions to the Rates of Intramolecular and Enzymatic Reactions

نویسندگان

  • THOMAS C. BRUICE
  • FELICE C. LIGHTSTONE
چکیده

reactions, rate enhancements of 108 M have been observed (Table 1).2 Intramolecular reactions where severe ground state strain is relieved upon formation of the transition state are known to be as large as 1016 M.3 Kirby4 has compiled a compendium of intramolecular reactions and has pointed out the relationship of rate to exothermicity. The importance of ground state conformations and the lack of translational entropy in intramolecular and enzymatic reactions have drawn attention from Menger5 and ourselves, while Jencks and Page6 have offered an explanation based on entropic driving forces stemming from the freezing out of motions and the dampening of vibrational frequencies in the transition state. Houk,7 in a scholarly study, has provided a correlation between rate constants for certain lactonization reactions and transition state stabilization. We provide here an account of our recent computational results8-10 dealing with the driving forces for enzymatic and intramolecular reactions. We introduce8 the term near attack conformation (NAC) to define the required conformation for juxtaposed reactants to enter a transition state (TS). The greater the mole fraction of reactant conformations that are present as NACs, the greater the rate constant. Rate constants for bond making and breaking in enzymatic reactions depend on, (i) the fraction of E‚S present as NACs, (ii) the change in solvation of reactant species within the NAC, as compared to water, and (iii) electrostatic forces11 which can stabilize the TS. The latter may include hydrogen bonds and metal ligation. Covalency in metal ligation and hydrogen bonding (low barrier hydrogen bonding12) most probably are introduced in the ground state. These features are best appreciated when ground state conformations and TS structures can be examined separately.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

DFT Study on the Possible Intramolecular Rearrangement of Four Monocyclic Monoterpenes

As the basis and preliminary work of future experimental study on PAHs formation under high temperature, theoretical computations on the intramolecular rearrangement reactions of sylvestrene (1-methyl-3-vinylcyclohexene) and 1,4-dimethyl-4-vinylcyclohexene are conducted and reveal that they may be transformed to themselves. The conversion between Dipentene and 2,4-dimethyl-4-vinylcyclohexen...

متن کامل

Preparation of Nickel Nanoparticles by Intramolecular Reaction of Nickel(II) Hydrazine Complex in the Solid State at Room Temperature

Ni6(N2H4)6(SO4)4(OH)2(H2O)8](SO4)(H2O)10 complex was prepared according to literature report. The reaction between aforementioned complex via sodium alkoxides as a reactants, were carried out in the solid state. The [Ni6(N2H4)6(SO4)4(OH)2(H2O)8](SO4)(H2O)10 undergoes an intramolecular two electrons oxidation-reduction reaction at room temperature and metallic nickel nanoparticles (Ni1-Ni5) was ...

متن کامل

Computational study of the intramolecular proton transfer between 6-hydroxypicolinic acid tautomeric forms and intermolecular hydrogen bonding in their dimers

This paper is a density functional theory (DFT) calculation of intramolecular proton transfer (IPT) in 6-hydroxypicolinic acid (6HPA, 6-hydroxypyridine-2-carboxylic acid) tautomeric forms. The transition state for the enol-to-keto transition is reported in the gas phase and in four different solvents. The planar and non-planar dimer forms of 6HPA keto and enol, respectively, were also studied i...

متن کامل

Hydrogen Abstraction Reaction of Hydroxyl Radical with 1,1-Dibromoethane and 1,2-Dibromoethane Studied by Using Semi-Classical Transition State Theory

The hydrogen abstraction reaction by OH radical from CH2BrCH2Br (R1) and CH₃CHBr2 (R2) is investigated theoretically by semi-classical transition state theory. The stationary points for both reactions are located by using ωB97X-D and KMLYP density functional methods along with cc-pVTZ basis. Single-point energy calculations are performed at the QCISD(T) and CCSD(T) levels of theory with differe...

متن کامل

Kinetic Study of Reaction between Allyl Compounds of Mg and Ethylene: Computational Investigation

The reactions of propenyl magnesium halides with ethylene were studied using ab initio calculations. The structure of the transition state and the ground state were evaluated and obtained the structural properties, theoretical thermodynamic and kinetic data i.e. rate constants of the reactions. The methods used for calculations are RHF, B3LYP and MP2 with 6-31G* b...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 1999